| Effect | Action (Windows 2 button/wheel mouse) |
| Menu | Click right button or left/right click on Jmol logo in bottom right corner or control-left-click |
| Rotate X,Y | Hold left button down and drag |
| Translate X,Y | Hold ctrl down AND hold right button down and drag or shift double left click and drag or double middle click and drag! |
| Rotate Z | Hold shift down AND hold right button down and drag (horizontally only) |
| Zoom | Hold shift down AND hold left button down and drag (vertically) or left click in Jmol window and use mouse wheel (may be disconcerting if used for page navigation - click outside Jmol window to cancel) |
| Reset and centre | Shift double left click or double middle click only when away from molecule |